checkCIF/PLATON report (basic structural check)
No syntax errors found. CIF dictionary
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Datablock: 04src0194
Bond precision: |
C-C = 0.0134 A |
Wavelength=0.71073 |
Cell: |
a=25.809(5) |
b=11.899(5) |
c=17.357(5) |
|
alpha=90 |
beta=90 |
gamma=90 |
Temperature: |
120 K |
|
|
|
Calculated |
Reported |
Volume |
5330(3)
|
5330(3) |
Space group |
P n a 21 |
Pna2(1) |
Hall group |
P 2c -2n |
P 2c -2n |
Moiety formula |
C44 H36 N16 Ni2, 4(Cl O4), 5(O)
|
?
|
Sum formula |
C44 H36 Cl4 N16 Ni2 O21
|
C44 H46 CL4 N16 NI2 O21
|
Mr |
1384.07 |
1394.19
|
Dx,g cm-3 |
1.725 |
1.737
|
Z |
4 |
4
|
Mu (mm-1) |
1.004 |
1.004
|
F000 |
2816.0 |
2856.0 |
F000' |
2822.34
|
|
h,k,lmax |
33,15,22 |
33,15,22 |
Nref |
6327[ 12247] |
12190 |
Tmin,Tmax |
0.845,0.970 |
0.809,0.970 |
Tmin' |
0.802 |
|
Correction method= MULTI-SCAN |
|
Data completeness= 1.93/1.00 |
Theta(max)= 27.480 |
R(reflections)= 0.0810( 8263) |
wR2(reflections)= 0.1905( 12190) |
The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O51
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O52
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O53
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O54
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O55
Alert level B
PLAT111_ALERT_2_B ADDSYM Detects (Pseudo) Centre of Symmetry ..... 94 PerFi
PLAT112_ALERT_2_B ADDSYM Detects Additional (Pseudo) Symm. Elem... a
PLAT430_ALERT_2_B Short Inter D...A Contact O22 .. O53 .. 2.83 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O51 .. O55 .. 2.72 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O52 .. O53 .. 2.64 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O52 .. O54 .. 2.79 Ang.
Alert level C
RINTA01_ALERT_3_C The value of Rint is greater than 0.12
Rint given 0.126
STRVA01_ALERT_4_C Flack test results are ambiguous.
From the CIF: _refine_ls_abs_structure_Flack 0.520
From the CIF: _refine_ls_abs_structure_Flack_su 0.030
PLAT020_ALERT_3_C The value of Rint is greater than 0.12 ......... 0.13
PLAT213_ALERT_2_C Atom N38 has ADP max/min Ratio ..... 3.80 prola
PLAT213_ALERT_2_C Atom C5 has ADP max/min Ratio ..... 3.60 oblat
PLAT213_ALERT_2_C Atom C7 has ADP max/min Ratio ..... 3.90 oblat
PLAT213_ALERT_2_C Atom C32 has ADP max/min Ratio ..... 3.30 prola
PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang .. 13
PLAT430_ALERT_2_C Short Inter D...A Contact O11 .. O55 .. 2.88 Ang.
PLAT430_ALERT_2_C Short Inter D...A Contact O33 .. O53 .. 2.88 Ang.
PLAT041_ALERT_1_C Calc. and Reported SumFormula Strings Differ ?
PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ?
PLAT153_ALERT_1_C The su's on the Cell Axes are Equal (x 100000) 500 Ang.
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors of Cl21
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors of Cl31
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 3
Cl O4
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 4
Cl O4
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 5
Cl O4
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 9
O
Alert level G
FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the
_chemical_formula_sum and the formula from the _atom_site* data.
Atom count from _chemical_formula_sum:C44 H46 Cl4 N16 Ni2 O21
Atom count from the _atom_site data: C44 H36 Cl4 N16 Ni2 O21
CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected.
CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional?
From the CIF: _cell_formula_units_Z 4
From the CIF: _chemical_formula_sum C44 H46 Cl4 N16 Ni2 O21
TEST: Compare cell contents of formula and atom_site data
atom Z*formula cif sites diff
C 176.00 176.00 0.00
H 184.00 144.00 40.00
Cl 16.00 16.00 0.00
N 64.00 64.00 0.00
Ni 8.00 8.00 0.00
O 84.00 84.00 0.00
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 27.48
From the CIF: _reflns_number_total 12190
Count of symmetry unique reflns 6327
Completeness (_total/calc) 192.67%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 5863
Fraction of Friedel pairs measured 0.927
Are heavy atom types Z>Si present yes
PLAT083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large. 30.22
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 823
PLAT033_ALERT_4_G Flack x Parameter Value Deviates from Zero ..... 0.52
5 ALERT level A = In general: serious problem
6 ALERT level B = Potentially serious problem
19 ALERT level C = Check and explain
7 ALERT level G = General alerts; check
5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
19 ALERT type 2 Indicator that the structure model may be wrong or deficient
4 ALERT type 3 Indicator that the structure quality may be low
9 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Publication of your CIF in IUCr journals
A basic structural check has been run on your CIF.
These basic checks will be run on all CIFs submitted for publication in
IUCr journals (Acta Crystallographica, Journal of Applied Crystallography,
Journal of Synchrotron Radiation); however, if you intend to submit to Acta
Crystallographica Section C or E, you should make sure that
full publication
checks are run on the final version of your CIF prior to submission.
Publication of your CIF in other journals
Please refer to the Notes for Authors of the relevant journal for any special instructions relating to CIF submission.
PLATON version of 13/08/2009; check.def file version of 12/08/2009
Datablock 04src0194 - ellipsoid plot |
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