checkCIF/PLATON report (basic structural check)
No syntax errors found. CIF dictionary
Please wait while processing .... Interpreting this report
Datablock: s92
Bond precision: |
C-C = 0.0064 A |
Wavelength=0.71073 |
Cell: |
a=15.229(3) |
b=26.120(5) |
c=9.2683(19) |
|
alpha=90 |
beta=90 |
gamma=90 |
Temperature: |
120 K |
|
|
|
Calculated |
Reported |
Volume |
3686.8(13) |
3686.7(13) |
Space group |
P n a 21 |
Pna2(1) |
Hall group |
P 2c -2n |
? |
Moiety formula |
C19 H40 Cl2 N10 O6 P6, C H Cl3
|
?
|
Sum formula |
C20 H41 Cl5 N10 O6 P6
|
C10 H20.50 CL2.50 N5 O3 P3
|
Mr |
880.70 |
440.35
|
Dx,g cm-3 |
1.587 |
1.587
|
Z |
4 |
8
|
Mu (mm-1) |
0.705 |
0.705
|
F000 |
1816.0 |
1816.0 |
F000' |
1821.89
|
|
h,k,lmax |
19,33,12 |
19,33,12 |
Nref |
4479[ 8433] |
7818 |
Tmin,Tmax |
0.888,0.919 |
0.742,0.920 |
Tmin' |
0.728 |
|
Correction method= MULTI-SCANS |
|
Data completeness= 1.75/0.93 |
Theta(max)= 27.480 |
R(reflections)= 0.0432( 6606) |
wR2(reflections)= 0.1045( 7818) |
The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
PLAT222_ALERT_3_A Large Non-Solvent H Ueq(max)/Ueq(min) ... 6.08 Ratio
PLAT241_ALERT_2_A Check High Ueq as Compared to Neighbors for C9
PLAT773_ALERT_2_A Suspect C-C Bond in CIF: C8 -- C9 .. 1.79 Ang.
Alert level B
PLAT220_ALERT_2_B Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.93 Ratio
PLAT230_ALERT_2_B Hirshfeld Test Diff for C9 -- C10 .. 17.17 su
PLAT241_ALERT_2_B Check High Ueq as Compared to Neighbors for C7
PLAT242_ALERT_2_B Check Low Ueq as Compared to Neighbors for C8'
PLAT352_ALERT_3_B Short N-H Bond (0.87A) N5 - H5N ... 0.64 Ang.
Alert level C
ABSTY02_ALERT_1_C An _exptl_absorpt_correction_type has been given without
a literature citation. This should be contained in the
_exptl_absorpt_process_details field.
Absorption correction given as multi-scans
PLAT213_ALERT_2_C Atom C9 has ADP max/min Ratio ............. 3.60 prola
PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for N6
PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C10
PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 6
PLAT367_ALERT_2_C Long? C(sp?)-C(sp?) Bond C9 - C10 ... 1.62 Ang.
PLAT410_ALERT_2_C Short Intra H...H Contact H10B .. H8B .. 1.90 Ang.
PLAT411_ALERT_2_C Short Inter H...H Contact H8'2 .. H5A .. 2.14 Ang.
PLAT431_ALERT_2_C Short Inter HL..A Contact Cl4 .. O4 .. 3.07 Ang.
PLAT031_ALERT_4_C Refined Extinction Parameter within Range ...... 3.00 Sigma
PLAT041_ALERT_1_C Calc. and Reported SumFormula Strings Differ ?
PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 0.50 Ratio
PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbours of C20
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2
C H Cl3
Alert level G
ABSTY01_ALERT_1_G Extra text has been found in the _exptl_absorpt_correction_type
field, which should be only a single keyword. A literature
citation should be included in the _exptl_absorpt_process_details
field.
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 27.48
From the CIF: _reflns_number_total 7818
Count of symmetry unique reflns 4479
Completeness (_total/calc) 174.55%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 3339
Fraction of Friedel pairs measured 0.745
Are heavy atom types Z>Si present yes
PLAT301_ALERT_3_G Note Main Residue Disorder .................... 2.00 Perc.
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 25
PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 2
PLAT779_ALERT_4_G Suspect or Irrelevant (Bond) Angle in CIF ...... 42.20 Deg.
C8' -C9 -C8 1.555 1.555 1.555
PLAT779_ALERT_4_G Suspect or Irrelevant (Bond) Angle in CIF ...... 34.72 Deg.
N1 -P1 -P2 1.555 1.555 1.555
PLAT779_ALERT_4_G Suspect or Irrelevant (Bond) Angle in CIF ...... 34.38 Deg.
N1 -P2 -P1 1.555 1.555 1.555
3 ALERT level A = In general: serious problem
5 ALERT level B = Potentially serious problem
14 ALERT level C = Check and explain
8 ALERT level G = General alerts; check
4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
13 ALERT type 2 Indicator that the structure model may be wrong or deficient
5 ALERT type 3 Indicator that the structure quality may be low
8 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Publication of your CIF in IUCr journals
A basic structural check has been run on your CIF.
These basic checks will be run on all CIFs submitted for publication in
IUCr journals (Acta Crystallographica, Journal of Applied Crystallography,
Journal of Synchrotron Radiation); however, if you intend to submit to Acta
Crystallographica Section C or E, you should make sure that
full publication
checks are run on the final version of your CIF prior to submission.
Publication of your CIF in other journals
Please refer to the Notes for Authors of the relevant journal for any special instructions relating to CIF submission.
PLATON version of 19/05/2009; check.def file version of 13/05/2009
Datablock s92 - ellipsoid plot |
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