checkCIF/PLATON report (basic structural check)
No syntax errors found. CIF dictionary
Please wait while processing .... Interpreting this report
Datablock: 06skc0059p21
Bond precision: |
C-C = 0.0053 A |
Wavelength=0.71073 |
Cell: |
a=8.2165(4) |
b=7.0534(5) |
c=10.0677(7) |
|
alpha=90 |
beta=104.266(4) |
gamma=90 |
Temperature: |
120 K |
|
|
|
Calculated |
Reported |
Volume |
565.47(6) |
565.47(6) |
Space group |
P 21 |
P21 |
Hall group |
P 2yb |
? |
Moiety formula |
C5 H14 N2, C2 O4, 2(H2 O)
|
?
|
Sum formula |
C7 H18 N2 O6
|
C7 H18 N2 O6
|
Mr |
226.23 |
226.23
|
Dx,g cm-3 |
1.329 |
1.329
|
Z |
2 |
2
|
Mu (mm-1) |
0.115 |
0.115
|
F000 |
244.0 |
244.0 |
F000' |
244.16
|
|
h,k,lmax |
9,7,11 |
9,7,11 |
Nref |
895[ 1633] |
738 |
Tmin,Tmax |
0.985,0.997 |
0.977,0.997 |
Tmin' |
0.977 |
|
Correction method= AbsCorr=MULTI-SCAN
|
|
Data completeness= 0.82[0.45] |
Theta(max)= 23.350 |
R(reflections)= 0.0344( 641) |
wR2(reflections)= 0.0788( 738) |
The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
REFLT03_ALERT_1_A Reflection count < 85% complete (theta max?)
From the CIF: _diffrn_reflns_theta_max 23.35
From the CIF: _diffrn_reflns_theta_full 23.35
From the CIF: _reflns_number_total 738
TEST2: Reflns within _diffrn_reflns_theta_max
Count of symmetry unique reflns 895
Completeness (_total/calc) 82.46%
PLAT022_ALERT_3_A Ratio Unique / Expected Reflections too Low .... 0.82
PLAT029_ALERT_3_A _diffrn_measured_fraction_theta_full Low ....... 0.82
Alert level B
REFNR01_ALERT_3_B Ratio of reflections to parameters is < 6 for a
non-centrosymmetric structure, where ZMAX < 18
sine(theta)/lambda 0.5577
Proportion of unique data used 1.0000
Ratio reflections to parameters 4.7613
THETM01_ALERT_3_B The value of sine(theta_max)/wavelength is less than 0.575
Calculated sin(theta_max)/wavelength = 0.5577
PLAT089_ALERT_3_B Poor Data / Parameter Ratio (Zmax .LT. 18) ..... 4.76
Alert level C
STRVA01_ALERT_2_C Chirality of atom sites is inverted?
From the CIF: _refine_ls_abs_structure_Flack 10.000
From the CIF: _refine_ls_abs_structure_Flack_su 10.000
PLAT250_ALERT_2_C Large U3/U1 Ratio for Average U(i,j) Tensor .... 2.01
PLAT340_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 5
PLAT432_ALERT_2_C Short Inter X...Y Contact O1B .. C26 .. 2.97 Ang.
PLAT032_ALERT_4_C Std. Uncertainty in Flack Parameter too High ... 10.00
PLAT033_ALERT_4_C Flack Parameter Value Deviates from Zero ....... 10.00
PLAT066_ALERT_1_C Predicted and Reported Transmissions Identical . ?
PLAT731_ALERT_1_C Bond Calc 0.85(5), Rep 0.85(2) ...... 2.50 su-Ra
O1W -H1W 1.555 1.555
PLAT731_ALERT_1_C Bond Calc 0.85(6), Rep 0.85(2) ...... 3.00 su-Ra
O1W -H2W 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(6), Rep 0.85(2) ...... 3.00 su-Ra
O1W -H2W 1.555 1.555
PLAT735_ALERT_1_C D-H Calc 0.85(5), Rep 0.85(2) ...... 2.50 su-Ra
O1W -H1W 1.555 1.555
PLAT736_ALERT_1_C H...A Calc 2.11(5), Rep 2.11(2) ...... 2.50 su-Ra
H1W -O2B 1.555 2.546
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 3
H2 O
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 4
H2 O
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 23.35
From the CIF: _reflns_number_total 738
Count of symmetry unique reflns 895
Completeness (_total/calc) 82.46%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 0
Fraction of Friedel pairs measured 0.000
Are heavy atom types Z>Si present no
PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 7
3 ALERT level A = In general: serious problem
3 ALERT level B = Potentially serious problem
14 ALERT level C = Check and explain
2 ALERT level G = General alerts; check
7 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
7 ALERT type 3 Indicator that the structure quality may be low
5 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Publication of your CIF in IUCr journals
A basic structural check has been run on your CIF.
These basic checks will be run on all CIFs submitted for publication in
IUCr journals (Acta Crystallographica, Journal of Applied Crystallography,
Journal of Synchrotron Radiation); however, if you intend to submit to Acta
Crystallographica Section C or E, you should make sure that
full publication
checks are run on the final version of your CIF prior to submission.
Publication of your CIF in other journals
Please refer to the Notes for Authors of the relevant journal for any special instructions relating to CIF submission.
PLATON version of 29/04/2008; check.def file version of 22/04/2008
Datablock 06skc0059p21 - ellipsoid plot |
|
Download CIF editor (publCIF) from the IUCr
Download CIF editor (enCIFer) from the CCDC
Test a new CIF entry
|