checkCIF/PLATON report (basic structural check)
No syntax errors found. CIF dictionary
Please wait while processing .... Interpreting this report
Datablock: s92
Bond precision: |
C-C = 0.0087 A |
Wavelength=0.71069 |
Cell: |
a=8.2431(5) |
b=17.0179(11) |
c=19.4384(12) |
|
alpha=74.385(2) |
beta=83.143(3) |
gamma=82.030(4) |
Temperature: |
120 K |
|
|
|
Calculated |
Reported |
Volume |
2591.2(3)
|
2591.2(3) |
Space group |
P -1 |
P-1 |
Hall group |
-P 1 |
-P 1 |
Moiety formula |
2(C21 H22 N4 Ni O2 S2), 9(O)
|
C21 H22 N4 NI O2 S2, 4.5(H2 O)
|
Sum formula |
C42 H44 N8 Ni2 O13 S4
|
C21 H31 N4 NI O6.50 S2
|
Mr |
1114.51 |
566.33
|
Dx,g cm-3 |
1.429 |
1.452
|
Z |
2 |
4
|
Mu (mm-1) |
0.954 |
0.955
|
F000 |
1152.0 |
1188.0 |
F000' |
1154.79
|
|
h,k,lmax |
9,20,23 |
9,20,23 |
Nref |
9157 |
9082 |
Tmin,Tmax |
0.955,0.963 |
0.870,0.963 |
Tmin' |
0.867 |
|
Correction method= MULTI-SCAN |
|
Data completeness= 0.992 |
Theta(max)= 25.020 |
R(reflections)= 0.0662( 6418) |
wR2(reflections)= 0.1971( 9082) |
The following ALERTS were generated. Each ALERT has the format
test-name_ALERT_alert-type_alert-level.
Click on the hyperlinks for more details of the test.
Alert level A
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O1W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O2W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O3W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O4W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O5W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O6W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O7W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O8W
PLAT306_ALERT_2_A Isolated Oxygen Atom (H-atoms Missing ?) ....... O9W
Alert level B
PLAT222_ALERT_3_B Large Non-Solvent H Ueq(max)/Ueq(min) ... 4.03 Ratio
PLAT430_ALERT_2_B Short Inter D...A Contact O1W .. O4W .. 2.78 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O1W .. O3W .. 2.82 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O1W .. O2W .. 2.83 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O3W .. O7W .. 2.70 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O3W .. O9W .. 2.74 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O3W .. O5W .. 2.76 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O4W .. O5W .. 2.77 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O7W .. O8W .. 2.79 Ang.
PLAT430_ALERT_2_B Short Inter D...A Contact O7W .. O8W .. 2.84 Ang.
Alert level C
CHEMW03_ALERT_2_C The ratio of given/expected molecular weight as
calculated from the _atom_site* data lies outside
the range 0.99 <> 1.01
From the CIF: _cell_formula_units_Z 4
From the CIF: _chemical_formula_weight 566.33
TEST: Calculate formula weight from _atom_site_*
atom mass num sum
C 12.01 21.00 252.23
H 1.01 22.00 22.18
N 14.01 4.00 56.03
O 16.00 6.50 103.99
S 32.07 2.00 64.13
Ni 58.69 1.00 58.69
Calculated formula weight 557.25
PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang .. 9
PLAT430_ALERT_2_C Short Inter D...A Contact O2W .. O6W .. 2.87 Ang.
PLAT430_ALERT_2_C Short Inter D...A Contact O4W .. O9W .. 2.86 Ang.
PLAT430_ALERT_2_C Short Inter D...A Contact O6W .. O8W .. 2.86 Ang.
PLAT041_ALERT_1_C Calc. and Reported SumFormula Strings Differ ?
PLAT042_ALERT_1_C Calc. and Reported MoietyFormula Strings Differ ?
PLAT043_ALERT_1_C Check Reported Molecular Weight ................ 566.33
PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 0.50 Ratio
PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ?
Alert level G
FORMU01_ALERT_1_G There is a discrepancy between the atom counts in the
_chemical_formula_sum and _chemical_formula_moiety. This is
usually due to the moiety formula being in the wrong format.
Atom count from _chemical_formula_sum: C21 H31 N4 Ni1 O6.5 S2
Atom count from _chemical_formula_moiety:C21 H31 I1 N5 O6.5 S2
FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the
_chemical_formula_sum and the formula from the _atom_site* data.
Atom count from _chemical_formula_sum:C21 H31 N4 Ni1 O6.5 S2
Atom count from the _atom_site data: C21 H22 N4 Ni1 O6.5 S2
CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected.
CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional?
From the CIF: _cell_formula_units_Z 4
From the CIF: _chemical_formula_sum C21 H31 N4 Ni O6.50 S2
TEST: Compare cell contents of formula and atom_site data
atom Z*formula cif sites diff
C 84.00 84.00 0.00
H 124.00 88.00 36.00
N 16.00 16.00 0.00
Ni 4.00 4.00 0.00
O 26.00 26.00 0.00
S 8.00 8.00 0.00
PLAT072_ALERT_2_G SHELXL First Parameter in WGHT Unusually Large.. 0.11
PLAT083_ALERT_2_G SHELXL Second Parameter in WGHT Unusually Large. 8.94
PLAT720_ALERT_4_G Number of Unusual/Non-Standard Labels .......... 6
9 ALERT level A = In general: serious problem
10 ALERT level B = Potentially serious problem
10 ALERT level C = Check and explain
7 ALERT level G = General alerts; check
8 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
25 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Publication of your CIF in IUCr journals
A basic structural check has been run on your CIF.
These basic checks will be run on all CIFs submitted for publication in
IUCr journals (Acta Crystallographica, Journal of Applied Crystallography,
Journal of Synchrotron Radiation); however, if you intend to submit to Acta
Crystallographica Section C or E, you should make sure that
full publication
checks are run on the final version of your CIF prior to submission.
Publication of your CIF in other journals
Please refer to the Notes for Authors of the relevant journal for any special instructions relating to CIF submission.
PLATON version of 13/08/2009; check.def file version of 12/08/2009
Datablock s92 - ellipsoid plot |
|
Download CIF editor (publCIF) from the IUCr
Download CIF editor (enCIFer) from the CCDC
Test a new CIF entry
|